This page contains papers from the Kim Lab. Google Scholar.

2026

Gene drive dynamics in plants: the role of seedbanks

Kim et al. 2026. Nature Plants (accepted)

Network-based genetic monitoring of landscape fragmentation

Peled, Kim, and Greenbaum. 2026. PNAS (accepted)

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2025

A clinically relevant morpho-molecular classification of lung neuroendocrine tumours

Sexton-Oates et al. 2025. medRxiv

Bayesian phylodynamic inference of population dynamics with dormancy

Cappello et al. 2025. PNAS

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2024

Admixed populations in the neighbor-joining algorithm: a geometric analysis with five taxa

Zhang et al. 2024. bioRxiv

e3SIM: epidemiological-ecological-evolutionary simulation framework for genomic epidemiology

Xu et al. 2024. bioRxiv

The recent rapid expansion of multidrug resistant Ural lineage Mycobacterium tuberculosis in Moldova

Chitwood et al. 2024. Nature Communications

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2023

Incorporating Ecology into Gene Drive Modeling

Kim et al. 2023. Ecology Letters

Record-Matching of STR Profiles with Fragmentary Genomic SNP Data

Kim and Rosenberg. 2023. EJHG

adaPop: Bayesian Inference of Dependent Population Dynamics in Coalescent Models

Cappello*, Kim*, and Palacios. 2023. PLOS Computational Biology

Multiomic analysis of malignant pleural mesothelioma identifies molecular axes and specialized tumor profiles driving intertumor heterogeneity

Mangiante et al. 2023. Nature Genetics

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2022

Deconvoluting Complex Correlates of COVID-19 Severity with a Multi-omic Pandemic Tracking Strategy

Parikh et al. 2022. Nature Communications

Statistical Challenges in Tracking the Evolution of SARS-CoV-2

Cappello et al. 2022. Statistical Science

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2021

Skin Deep: The Decoupling of Genetic Admixture Levels from Phenotypes that Differed between Source Populations

Kim et al. 2021. Am. J. Phys. Anthropol.

Designing Gene Drives to Limit Spillover to Non-Target Populations

Greenbaum et al. 2021. PLOS Genetics

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2020

Distance Metrics for Ranked Evolutionary Trees

Kim, Palacios, and Rosenberg. 2020. PNAS

High-Throughput SARS-CoV-2 and Host Genome Sequencing from Single Nasopharyngeal Swabs

Gorzynski et al. 2020. medRxiv

Human-Genetic Ancestry Inference and False Positives in Forensic Familial Searching

Fortier, Kim, and Rosenberg. 2020. G3

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2019

Mathematical and Simulation-Based Analysis of the Behavior of Admixed Taxa in the Neighbor-Joining Algorithm

Kim et al. 2019. Bull. Math. Biol.

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2018

Statistical Detection of Relatives Typed with Disjoint Forensic and Biomedical Loci

Kim et al. 2018. Cell

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2016

Individual Identifiability Predicts Population Identifiability in Forensic Microsatellite Markers

Algee-Hewitt et al. 2016. Curr. Bio.

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Publications in Physics

Ab Initio Multiple Spawning on Laser-Dressed States: A Study of 1,3-Cyclohexadiene Photoisomerization via Light-Induced Conical Intersections

Kim et al. 2015. J. Phys. B: At. Mol. Opt. Phys.

Enhancement of Strong-Field Multiple Ionization in the Vicinity of the Conical Intersection in 1,3-cyclohexadiene Ring Opening

Petrovic et al. 2013. J. Chem. Phys.

Transient X-Ray Fragmentation: Probing a Prototypical Photoinduced Ring Opening

Petrovic et al. 2012. Phys. Rev. Lett.

Control of 1,3-Cyclohexadiene Photoisomerization Using Light-Induced Conical Intersections

Kim et al. 2012. J. Phys. Chem. A

Ultrafast Ring Opening in 1,3-cyclohexadiene Investigated by Simplex-Based Spectral Unmixing

White et al. 2012. J. Chem. Phys.

Interactions between Individual Carbon Nanotubes Studied by Rayleigh Scattering Spectroscopy

Wang et al. 2006. Phys. Rev. Lett.